enable-migrations
add-migration Initial -IgnoreChanges
update-database

using System.Data.Entity.Migrations;
using System.Data.Entity.Migrations.Design;

namespace EFTests
{
    /// <summary>
    /// Using Entity Framework Code First with an existing database.
    /// </summary>
    public static class CreateMigrationHistory
    {
        /// <summary>
        /// Creates a new '__MigrationHistory' table.
        /// Enables migrations using Entity Framework Code First on an existing database.
        /// </summary>        
        public static void UpdateDatabase(DbMigrationsConfiguration configuration)
        {            
            var scaffolder = new MigrationScaffolder(configuration);
            // Creates an empty migration, so that the future migrations will start from the current state of your database.
            var scaffoldedMigration = scaffolder.Scaffold("IgnoreChanges", ignoreChanges: true);

            // enable-migrations
            // add-migration Initial -IgnoreChanges
            configuration.MigrationsAssembly = new MigrationCompiler(ProgrammingLanguage.CSharp.ToString())
                                                .Compile(configuration.MigrationsNamespace, scaffoldedMigration);

            // update-database  
            var dbMigrator = new DbMigrator(configuration);            
            dbMigrator.Update();
        }
    }
}

using System;
using System.CodeDom.Compiler;
using System.Collections.Generic;
using System.ComponentModel;
using System.Data.Common;
using System.Data.Entity;
using System.Data.Entity.Migrations;
using System.Data.Entity.Migrations.Design;
using System.Data.Entity.Spatial;
using System.IO;
using System.Linq;
using System.Linq.Expressions;
using System.Reflection;
using System.Resources;
using System.Text;

namespace EF_General.Models.Ex22
{
    public enum ProgrammingLanguage
    {
        CSharp,
        VB
    }

    public class MigrationCompiler
    {
        private readonly CodeDomProvider _codeProvider;

        public MigrationCompiler(string language)
        {
            _codeProvider = CodeDomProvider.CreateProvider(language);
        }

        public Assembly Compile(string @namespace, params ScaffoldedMigration[] scaffoldedMigrations)
        {
            var options = new CompilerParameters
            {
                GenerateExecutable = false,
                GenerateInMemory = true
            };

            options.ReferencedAssemblies.Add(typeof(string).Assembly.Location);
            options.ReferencedAssemblies.Add(typeof(Expression).Assembly.Location);
            options.ReferencedAssemblies.Add(typeof(DbMigrator).Assembly.Location);
            options.ReferencedAssemblies.Add(typeof(DbContext).Assembly.Location);
            options.ReferencedAssemblies.Add(typeof(DbConnection).Assembly.Location);
            options.ReferencedAssemblies.Add(typeof(Component).Assembly.Location);
            options.ReferencedAssemblies.Add(typeof(MigrationCompiler).Assembly.Location);
            options.ReferencedAssemblies.Add(typeof(DbGeography).Assembly.Location);

            var embededResources = GenerateEmbeddedResources(scaffoldedMigrations, @namespace);
            foreach (var resource in embededResources)
                options.EmbeddedResources.Add(resource);

            var sources = scaffoldedMigrations.SelectMany(g => new[] { g.UserCode, g.DesignerCode });

            var compilerResults = _codeProvider.CompileAssemblyFromSource(options, sources.ToArray());
            foreach (var resource in embededResources)
                File.Delete(resource);

            if (compilerResults.Errors.Count > 0)
            {
                throw new InvalidOperationException(BuildCompileErrorMessage(compilerResults.Errors));
            }

            return compilerResults.CompiledAssembly;
        }

        private static string BuildCompileErrorMessage(CompilerErrorCollection errors)
        {
            var stringBuilder = new StringBuilder();

            foreach (CompilerError error in errors)
            {
                stringBuilder.AppendLine(error.ToString());
            }

            return stringBuilder.ToString();
        }

        private static IEnumerable<string> GenerateEmbeddedResources(IEnumerable<ScaffoldedMigration> scaffoldedMigrations, string @namespace)
        {
            foreach (var scaffoldedMigration in scaffoldedMigrations)
            {
                var className = GetClassName(scaffoldedMigration.MigrationId);
                var embededResource = Path.Combine(
                    Path.GetTempPath(),
                    @namespace + "." + className + ".resources");

                using (var writer = new ResourceWriter(embededResource))
                {
                    foreach (var resource in scaffoldedMigration.Resources)
                        writer.AddResource(resource.Key, resource.Value);
                }

                yield return embededResource;
            }
        }

        private static string GetClassName(string migrationId)
        {
            return migrationId
                .Split(new[] { '_' }, 2)
                .Last()
                .Replace(" ", string.Empty);
        }
    }
}

 CreateMigrationHistory.UpdateDatabase(new Configuration());

    public class Configuration : DbMigrationsConfiguration<MyContext>
    {
        public Configuration()
        {
            AutomaticMigrationsEnabled = true;
            AutomaticMigrationDataLossAllowed = true;
        }
    }